Bubba Kush Mother Run 2

Had some bad luck recently. I took a number of clones off my mother and had them in their heated nursery tray. While I was moving some things around it it fell off the shelf, spilling everywhere and the clones were pretty much killed. At this point in veg the mother is showing nutrient and environment stress from being in the same tent as the flowering plants and their needs. I am seeing leaves die on the upper growth and am wondering what I should do. Do I try to get more clones off it and start over? Or do I try to transplant it and send the mother into flower to at least get something going.